Usage

The uploaded PDF file gives a step-by-step guide to installing and running the plugin using Fiji.

General Instructions:

  • Download files from this Github repo
  • Place the jar file included in this archive into the plugins folder within the installation location of Fiji/ImageJ.
  • Start/Restart Fiji/ImageJ
  • Run Neurotracker from Plugins > Tracking > Neurotracker
  • Follow the instructions in the included PDF